PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013603373.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 488aa    MW: 54133.4 Da    PI: 8.3963
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013603373.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.4e-057090323
                    ETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                    C++Cgk F r  nL+ H r H
  XP_013603373.1 70 CEICGKGFQRDQNLQLHRRGH 90
                    *******************88 PP

2zf-C2H213.20.00026144166123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC++C+k++  +s+ k H +t+
  XP_013603373.1 144 WKCGKCSKRYAVQSDWKAHSKTC 166
                     58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.1E-76790No hitNo description
Gene3DG3DSA:3.30.160.604.2E-56790IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.4896890IPR007087Zinc finger, C2H2
PROSITE patternPS0002807090IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.7E-4132165IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.1E-7139164No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MTAEEHTISS SGGYVQSLSA TDHVDHRHEH EPFNPPLAKK KRNLPGNPDP EAEVIALSPK  60
TLMATNRFLC EICGKGFQRD QNLQLHRRGH NLPWKLKQRT SKEVRKRVYV CPEKSCVHHN  120
PTRALGDLTG IKKHFCRKHG EKKWKCGKCS KRYAVQSDWK AHSKTCGTRE YRCDCGTIFS  180
RRDSFITHRA FCDALAEETA RLNAASHLKS LTGNSLNYHY LMGTLIPSPQ PPPSFPFGAP  240
QHHHHPFPIT TTTFDQHHHQ DAMKPTSSLS LWMGGNVNHH HVTDEDCTQP RSPQEDFNWV  300
FGNANNSGEL SDSLITHENI NMAAHNENVN AVTSLSVPSR FSNVDQMRQD ANAAVANMSA  360
TALLQKAAQM GVTSSTPTNT NDQSAFLQSF TSKISDESQN VEDGGSDKFF ALFGSNSVGL  420
MSNNGLGHEI VNPRNGVSVV SGIDELQNYP LKRRRVENGD ALGGGQTRDF LGVGVQTMCR  480
SSSFNGWN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1451455KRRRV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00125DAPTransfer from AT1G03840Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895090.0AC189509.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB089B13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013603373.10.0PREDICTED: zinc finger protein MAGPIE-like
SwissprotQ9ZWA60.0IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBLA0A0D3DZ450.0A0A0D3DZ45_BRAOL; Uncharacterized protein
STRINGBra032541.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37102660
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.10.0C2H2 family protein